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1

Fiji: an open-source platform for biological-image analysis

Schindelin, Johannes, Arganda-Carreras, Ignacio, Frise, Erwin, Kaynig, Verena, Longair, Mark, Pietzsch, Tobias, Preibisch, Stephan, Rueden, Curtis, Saalfeld, Stephan, Schmid, Benjamin, Tinevez, Jean-Y

Journal:

Year:

2012

Language:

english

File:

PDF, 1.25 MB

english, 2012

2

Vision-Based Fall Detection with Convolutional Neural Networks

Núñez-Marcos, Adrián, Azkune, Gorka, Arganda-Carreras, Ignacio

Journal:

Wireless Communications and Mobile Computing

Year:

2017

Language:

english

File:

PDF, 2.97 MB

english, 2017

3

A Statistically Representative Atlas for Mapping Neuronal Circuits in the Drosophila Adult Brain

Arganda-Carreras, Ignacio, Manoliu, Tudor, Mazuras, Nicolas, Schulze, Florian, Iglesias, Juan E., Bühler, Katja, Jenett, Arnim, Rouyer, François, Andrey, Philippe

Journal:

Frontiers in Neuroinformatics

Year:

2018

Language:

english

File:

PDF, 6.25 MB

english, 2018

4

Toward graph-based semi-supervised face beauty prediction

Dornaika, Fadi, Wang, Kunwei, Arganda-Carreras, Ignacio, Elorza, Anne, Moujahid, Abdelmalik

Journal:

Expert Systems with Applications

Year:

2020

Language:

english

File:

PDF, 1.96 MB

english, 2020

5

[IEEE 2019 Ninth International Conference on Image Processing Theory, Tools and Applications (IPTA) - Istanbul, Turkey (2019.11.6-2019.11.9)] 2019 Ninth International Conference on Image Processing Theory, Tools and Applications (IPTA) - Deep Learning based Detection of Hair Loss Levels from Facial Images

Benhabiles, Halim, Hammoudi, Karim, Yang, Ziheng, Windal, Feryal, Melkemi, Mahmoud, Dornaika, Fadi, Arganda-Carreras, Ignacio

Year:

2019

File:

PDF, 210 KB

2019

6

Benchmarking DNN Inference Performance on Serverless Environments With MLPerf

Elordi, Unai, Unzueta, Luis, Goenetxea, Jon, Sanchez-Carballido, Sergio, Arganda-Carreras, Ignacio, Otaegui, Oihana

Journal:

Year:

2020

File:

PDF, 578 KB

2020

7

3D reconstruction of histological sections: Application to mammary gland tissue

Ignacio Arganda-Carreras, Rodrigo Fernández-González, Arrate Muñoz-Barrutia, Carlos Ortiz-De-Solorzano

Journal:

Microscopy Research and Technique

Year:

2010

Language:

english

File:

PDF, 946 KB

english, 2010

8

Elastic image registration of 2-D gels for differential and repeatability studies

Carlos O. S. Sorzano, Ignacio Arganda-Carreras, Philippe Thévenaz, Ana Beloso, Gracia Morales, Israel Valdés, Carmen Pérez-García, Carmen Castillo, Elisa Garrido, Michael Unser

Journal:

Year:

2008

Language:

english

File:

PDF, 274 KB

english, 2008

9

Serial two-photon tomography for automated ex vivo mouse brain imaging

Ragan, Timothy, Kadiri, Lolahon R, Venkataraju, Kannan Umadevi, Bahlmann, Karsten, Sutin, Jason, Taranda, Julian, Arganda-Carreras, Ignacio, Kim, Yongsoo, Seung, H Sebastian, Osten, Pavel

Journal:

Year:

2012

Language:

english

File:

PDF, 789 KB

english, 2012

10

BoneJ: Free and extensible bone image analysis in ImageJ

Michael Doube, Michał M. Kłosowski, Ignacio Arganda-Carreras, Fabrice P. Cordelières, Robert P. Dougherty, Jonathan S. Jackson, Benjamin Schmid, John R. Hutchinson, Sandra J. Shefelbine

Journal:

Year:

2010

Language:

english

File:

PDF, 317 KB

english, 2010

11

A generic classification-based method for segmentation of nuclei in 3D images of early embryos

Gul-Mohammed, Jaza, Arganda-Carreras, Ignacio, Andrey, Philippe, Galy, Vincent, Boudier, Thomas

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 780 KB

english, 2014

12

Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling

Miyasaka, Nobuhiko, Arganda-Carreras, Ignacio, Wakisaka, Noriko, Masuda, Miwa, Sümbül, Uygar, Seung, H. Sebastian, Yoshihara, Yoshihiro

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 7.29 MB

english, 2014

13

Mapping Social Behavior-Induced Brain Activation at Cellular Resolution in the Mouse

Kim, Yongsoo, Venkataraju, Kannan Umadevi, Pradhan, Kith, Mende, Carolin, Taranda, Julian, Turaga, Srinivas C., Arganda-Carreras, Ignacio, Ng, Lydia, Hawrylycz, Michael J., Rockland, Kathleen S., Seun

Journal:

Year:

2015

Language:

english

File:

PDF, 4.15 MB

english, 2015

14

Phenotyping nematode feeding sites: three-dimensional reconstruction and volumetric measurements of giant cells induced by root-knot nematodes in Arabidopsis

Cabrera, Javier, Díaz-Manzano, Fernando E., Barcala, Marta, Arganda-Carreras, Ignacio, de Almeida-Engler, Janice, Engler, Gilbert, Fenoll, Carmen, Escobar, Carolina

Journal:

New Phytologist

Year:

2015

Language:

english

File:

PDF, 2.08 MB

english, 2015

15

Non-rigid consistent registration of 2D image sequences

I. Arganda-carreras, C. O. S. Sorzano, P. Thévenaz, A. Muñoz-barrutia, J. Kybic, R. Marabini, J. M. Carazo, C. Ortiz-de Solorzano

Year:

2010

Language:

english

File:

PDF, 4.52 MB

english, 2010

16

[IEEE 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - San Francisco, CA, USA (1-5 Sept. 2004)] The 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Automatic registration of serial mammary gland sections

Arganda-Carreras, I., Fernandez-Gonzalez, R., Ortiz-de-Solorzano, C.

Year:

2004

Language:

english

File:

PDF, 1.62 MB

english, 2004

17

MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ

Legland, David, Arganda-Carreras, Ignacio, Andrey, Philippe

Journal:

Year:

2016

Language:

english

File:

PDF, 197 KB

english, 2016

18

Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification

Arganda-Carreras, Ignacio, Kaynig, Verena, Rueden, Curtis, Eliceiri, Kevin W., Schindelin, Johannes, Cardona, Albert, Sebastian Seung, H.

Journal:

Year:

2017

Language:

english

File:

PDF, 836 KB

english, 2017

19

[IEEE 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017) - Melbourne, Australia (2017.4.18-2017.4.21)] 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017) - Group-wise 3D registration based templates to study the evolution of ant worker neuroanatomy

Arganda-Carreras, I., Gordon, D. G., Arganda, S., Beaudoin, M., Traniello, J. F.A.

Year:

2017

Language:

english

File:

PDF, 2.22 MB

english, 2017

20

TrakEM2 Software for Neural Circuit Reconstruction

Cardona, Albert, Saalfeld, Stephan, Schindelin, Johannes, Arganda-Carreras, Ignacio, Preibisch, Stephan, Longair, Mark, Tomancak, Pavel, Hartenstein, Volker, Douglas, Rodney J., Samuel, Aravinthan

Journal:

Year:

2012

Language:

english

File:

PDF, 668 KB

english, 2012

21

Crowdsourcing the creation of image segmentation algorithms for connectomics

Arganda-Carreras, Ignacio, Turaga, Srinivas C., Berger, Daniel R., Cireşan, Dan, Giusti, Alessandro, Gambardella, Luca M., Schmidhuber, Jürgen, Laptev, Dmitry, Dwivedi, Sarvesh, Buhmann, Joachim M., L

Journal:

Frontiers in Neuroanatomy

Year:

2015

Language:

english

File:

PDF, 3.68 MB

english, 2015

22

Age estimation in facial images through transfer learning

Dornaika, F., Arganda-Carreras, I., Belver, C.

Journal:

Machine Vision and Applications

Year:

2018

Language:

english

File:

PDF, 1.88 MB

english, 2018

23

WDR20 regulates shuttling of the USP12 deubiquitinase complex between the plasma membrane, cytoplasm and nucleus

Olazabal-Herrero, Anne, Sendino, Maria, Arganda-Carreras, Ignacio, Rodríguez, Jose Antonio

Journal:

European Journal of Cell Biology

Year:

2018

Language:

english

File:

PDF, 6.13 MB

english, 2018

24

An Optimized Approach to Perform Bone Histomorphometry

Malhan, Deeksha, Muelke, Matthias, Rosch, Sebastian, Schaefer, Annemarie B., Merboth, Felix, Weisweiler, David, Heiss, Christian, Arganda-Carreras, Ignacio, El Khassawna, Thaqif

Journal:

Frontiers in Endocrinology

Year:

2018

File:

PDF, 1.82 MB

2018

25

Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy

Abdeladim, Lamiae, Matho, Katherine S., Clavreul, Solène, Mahou, Pierre, Sintes, Jean-Marc, Solinas, Xavier, Arganda-Carreras, Ignacio, Turney, Stephen G., Lichtman, Jeff W., Chessel, Anatole, Bemelma

Journal:

Nature Communications

Year:

2019

File:

PDF, 15.51 MB

2019

26

Transfer learning and feature fusion for kinship verification

Dornaika, F., Arganda-Carreras, I., Serradilla, O.

Journal:

Neural Computing and Applications

Year:

2019

Language:

english

File:

PDF, 5.76 MB

english, 2019

27

Publisher Correction: Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy

Abdeladim, Lamiae, Matho, Katherine S., Clavreul, Solène, Mahou, Pierre, Sintes, Jean-Marc, Solinas, Xavier, Arganda-Carreras, Ignacio, Turney, Stephen G., Lichtman, Jeff W., Chessel, Anatole, Bemelma

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 442 KB

english, 2019

28

Correction: Division of labor and brain evolution in insect societies: Neurobiology of extreme specialization in the turtle ant Cephalotes varians

Gordon, Darcy Greer, Zelaya, Alejandra, Arganda-Carreras, Ignacio, Arganda, Sara, Traniello, James F. A.

Journal:

Year:

2019

Language:

english

File:

PDF, 226 KB

english, 2019

29

Division of labor and brain evolution in insect societies: Neurobiology of extreme specialization in the turtle ant Cephalotes varians

Gordon, Darcy Greer, Zelaya, Alejandra, Arganda-Carreras, Ignacio, Arganda, Sara, Traniello, James F. A., Nascimento, Fabio S.

Journal:

Year:

2019

Language:

english

File:

PDF, 3.22 MB

english, 2019

30

Robust Regression with Deep CNNs for Facial Age Estimation: An Empirical Study

Dornaika, F., Bekhouche, S.E., Arganda-Carreras, Ignacio

Journal:

Expert Systems with Applications

Year:

2019

Language:

english

File:

PDF, 7.61 MB

english, 2019

31

Robust Regression with Deep CNNs for Facial Age Estimation: An Empirical Study

Dornaika, F., Bekhouche, S.E., Arganda-Carreras, Ignacio

Journal:

Expert Systems with Applications

Year:

2019

File:

PDF, 7.61 MB

2019

32

Image-based face beauty analysis via graph-based semi-supervised learning

Dornaika, F., Elorza, A., Wang, K., Arganda-Carreras, I.

Journal:

Multimedia Tools and Applications

Year:

2019

File:

PDF, 1.69 MB

2019

33

ANHIR: Automatic Non-rigid Histological Image Registration Challenge

Borovec, Jiri, Kybic, Jan, Arganda-Carreras, Ignacio, Sorokin, Dmitry V., Bueno, Gloria, Khvostikov, Alexander V., Bakas, Spyridon, Chang, Eric I-Chao, Heldmann, Stefan, Kartasalo, Kimmo, Latonen, Lee

Journal:

IEEE Transactions on Medical Imaging

Year:

2020

File:

PDF, 3.72 MB

2020

34

Freeze-frame imaging of synaptic activity using SynTagMA

Perez-Alvarez, Alberto, Fearey, Brenna C., OâToole, Ryan J., Yang, Wei, Arganda-Carreras, Ignacio, Lamothe-Molina, Paul J., Moeyaert, Benjamien, Mohr, Manuel A., Panzera, Lauren C., Schulze, Christi

Journal:

Nature Communications

Year:

2020

File:

PDF, 14.89 MB

2020

35

Efficient and Compact Face Descriptor for Driver Drowsiness Detection

Moujahid, Abdelmalik, Dornaika, Fadi, Arganda-Carreras, Ignacio, Reta, Jorge

Journal:

Expert Systems with Applications

Year:

2020

File:

PDF, 1.28 MB

2020